PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G153700.1.p
Common NameGLYMA_02G153700, LOC100812475
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 472aa    MW: 50478.7 Da    PI: 8.8837
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-115075227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         + ++C +++rtG C yG+rC+++H++
  Glyma.02G153700.1.p 50 GVPNCVYYMRTGVCGYGGRCRYNHPR 75
                         6799********************96 PP
2zf-CCCH40.64.4e-1396120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Glyma.02G153700.1.p  96 EPPCQYYLKTGTCKFGASCKFHHPK 120
                          79*********************96 PP
3zf-CCCH37.15.4e-12141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +CkF+H++
  Glyma.02G153700.1.p 141 GEKECSYYLKTGQCKFGISCKFHHPQ 166
                          7899********************97 PP
4zf-CCCH352.4e-11297323127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G  C+++H++
  Glyma.02G153700.1.p 297 PGEPECQYYLRTGDCKFGLACRYHHPR 323
                          5799*********************96 PP
5zf-CCCH33.28.7e-11344366426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C f++++G+Ck+G++CkF H+
  Glyma.02G153700.1.p 344 QPCAFYLQNGHCKFGSTCKFDHP 366
                          69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6624876IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99593121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624296324IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5300324IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216340368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6343371IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8344366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5344366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDLYGRSPAR NGPNPVNQPE WSSPGTDTAL EESMWHLTLG GGESYPERSG VPNCVYYMRT  60
GVCGYGGRCR YNHPRDRAAV AAAVRATGDY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK  120
NGGGYLSQAP LNVYGYPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL PEQYGGASSS LRVARPPILP GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV  240
SPVPSPGAQP AVGATSLYGV TQLSSPTSAF ARPYTPLPST TDPSRSNPKE QLYPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR PGLQPCAFYL QNGHCKFGST  360
CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSQLAPST TSSDLRPELM SGSKKESFSA  420
RIPSSGNSSG TSVGLIFSQG GSVSLSDVQL SSQSNAPPNS SRSTRQSGEI R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.564550.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518955.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_028207352.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLI1JFH10.0I1JFH1_SOYBN; Uncharacterized protein
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein