PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G166400.1.p
Common NameGLYMA_02G166400, LOC100808548
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 239aa    MW: 25668.6 Da    PI: 7.2733
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G166400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.8e-39451461101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrr+C+++C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p ++r++a +++ yeA+ar++dPvyG+v++il+lqqq+++
  Glyma.02G166400.1.p  45 PCGACKFLRRRCVEGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPVNRRNEASTTISYEAQARLSDPVYGCVSTILALQQQVAT 134
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+l+++l
  Glyma.02G166400.1.p 135 LQAELAMLQTQL 146
                          *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.46144146IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3945143IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAESQGGSGG DDGASGSRRR GSTSRRAMAA QTQDEAMVES SPTTPCGACK FLRRRCVEGC  60
IFAPHFGTDQ GAAKFAAVHK VFGASNVSKL LSNIPVNRRN EASTTISYEA QARLSDPVYG  120
CVSTILALQQ QVATLQAELA MLQTQLMNSR FAYASALQTT QLQQPNMNTG ALQPAYSNNS  180
CASTNLLNLS TFNNNPSFVL EMDTAPSSSL EPLQLTRLSQ CKEEDEEENK TQKAFNHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37401521115LOB family transfactor Ramosa2.1
5ly0_B1e-37401521115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G166400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-106AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518033.21e-177LOB domain-containing protein 20
SwissprotQ9SRV39e-70LBD20_ARATH; LOB domain-containing protein 20
TrEMBLI1JFY21e-175I1JFY2_SOYBN; Uncharacterized protein
STRINGGLYMA02G27230.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-56LOB domain-containing protein 20