PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G173900.2.p
Common NameGLYMA_02G173900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 228aa    MW: 23751.3 Da    PI: 9.481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G173900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-093055227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.02G173900.2.p 30 KTRICNKFNTAEGCKFGDKCHFAHGE 55
                         8***********************96 PP
2zf-CCCH36.21e-11194218126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +G+rC+FaHg
  Glyma.02G173900.2.p 194 FKTKLCENFAK-GSCTFGERCHFAHG 218
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-142659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-82759IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-42855IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.612856IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.18E-1590170IPR004088K Homology domain, type 1
SMARTSM003223.9E-1299169IPR004087K Homology domain
PROSITE profilePS5008414.823100164IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.6E-17100168IPR004088K Homology domain, type 1
CDDcd001052.33E-15102165No hitNo description
PfamPF000132.9E-12102165IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-16189224IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352193220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8193223IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9194218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMNLKPAAPP PRTVAAPPPI PNGSAPSAVK TRICNKFNTA EGCKFGDKCH FAHGEWELGK  60
PIAPSIDDHH HHRPLGPPAG GRMAGRIEPP PAMAGSFGAI STAKISVEAS LAGAIIGKGG  120
VNSKQICRQT GAKLSIREHE SDPNLRNIEL EGTFEQIKEA SNMVKDLLLT VSMSAPPKST  180
PGVPGAPAPP GSNFKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.547810.0hypocotyl| leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G173900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943100.0BT094310.1 Soybean clone JCVI-FLGm-18B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209095.11e-164zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ33e-80C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0R0KXN31e-163A0A0R0KXN3_SOYBN; Uncharacterized protein
TrEMBLA0A445LQ691e-162A0A445LQ69_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A
TrEMBLA0A445LQD61e-163A0A445LQD6_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform B
TrEMBLI1JG211e-162I1JG21_SOYBN; Uncharacterized protein
STRINGGLYMA02G29360.11e-163(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-65C3H family protein