PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G177800.1.p

Common Name

GLYMA_02G177800, LOC100776650

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 214aa MW: 24274.6 Da PI: 7.1134

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G177800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.6	3.7e-30	75	129	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LHe+Fv av++LGG++kA Pk++l++m+ k+Lt+ hvkSHLQkYR+ Glyma.02G177800.1.p 75 KNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLQMMNSKSLTIFHVKSHLQKYRT 129 78****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-16	73	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	73	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-21	75	129	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-8	79	128	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-6	159	203	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MFGSVVDSFL SSDEDTFCET YREYSELPCH DVSLYEHFRH EEKRLEGDDS APVIEAEVVC 60 ATSGNSASSM VPTRKNRIKW TKDLHEQFVA AVNSLGGPQK AKPKAVLQMM NSKSLTIFHV 120 KSHLQKYRTT MYMQNSSKEG YKESKGIDMV TELQQKIYMQ IEESRLLQLE IGRGIQEQLE 180 AQRNLQMLVE EQKKQVNSVC GKNQIKQIGG SKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	75	132	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	75	132	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	75	132	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	75	132	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	75	132	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G177800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236141	8e-52	AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628629.1	1e-159	myb family transcription factor PHL5 isoform X3
Swissprot	Q0WVU3	2e-35	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	K7K972	1e-158	K7K972_SOYBN; Uncharacterized protein
STRING	GLYMA02G30714.1	1e-157	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18701	4	6
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	8e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G177800.1.p
Entrez Gene	100776650