PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G179300.1.p
Common NameGLYMA_02G179300, LOC102664494
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20104 Da    PI: 7.0084
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G179300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-202573149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k i nk   qvtfsk r+g++KKA+EL +LC+++ avi+fs+++++y +
  Glyma.02G179300.1.p 25 KTIANKCSLQVTFSKHRTGVFKKASELATLCGVDLAVIMFSPNNHVYSF 73
                         6799*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.1421777IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-271776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-251893IPR002100Transcription factor, MADS-box
CDDcd002651.91E-311885No hitNo description
PRINTSPR004046.2E-171939IPR002100Transcription factor, MADS-box
PfamPF003194.9E-222773IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-173954IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-175475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDSENVPNLS DVTKKTKGRQ KIEMKTIANK CSLQVTFSKH RTGVFKKASE LATLCGVDLA  60
VIMFSPNNHV YSFGSPNVDS VIQRYTTEGP PPLFTQDLNE APCTMDEGEL QAHLNCLSNQ  120
IDAEKQRVED LNHLLMAAKD HIWWDVPIES MSNAQLEKYH KMLKEIKLKH MRHTHGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254504e-93root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO158123504e-93
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G179300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575989.11e-132agamous-like MADS-box protein AGL62
RefseqXP_028188651.11e-132agamous-like MADS-box protein AGL62
TrEMBLK7K9891e-131K7K989_SOYBN; Uncharacterized protein
STRINGGLYMA02G30990.21e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3509722
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-38AGAMOUS-like 62