PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G180900.1.p
Common NameGLYMA_02G180900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 248aa    MW: 27971.6 Da    PI: 7.8746
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G180900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.51.8e-2459113358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          + +Y+eClkNh ++ Ggh++DGC  f+p  geegt +alkC  C+CH nFHR+e+ 
  Glyma.02G180900.1.p  59 NEKYHECLKNHTVKNGGHTLDGCITFLPL-GEEGTLDALKCLVCNCHQNFHRKETP 113
                          679*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-2461112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2161111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.98862111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.87E-15161233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-24169233IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-22175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEFKQHEETE LRMPAATASH DDFRIPPSSR GEEEPVVAAI PVAIPVTPTP PTLAQNNNNE  60
KYHECLKNHT VKNGGHTLDG CITFLPLGEE GTLDALKCLV CNCHQNFHRK ETPNDTYLVP  120
YYHHSSLPLA VYYGEQVGYP RVQGQQCTSL ALSSRSRGSV SDPTSGAIPH GGSSKKRFKT  180
RFTQEQKEKM MAFAEKLGWR ILKHDESVMQ EFCSQASIQP HMLKVWVHNN KHTLVWGDSY  240
FYGRFMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211742331675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G180900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350420.0AC235042.1 Glycine max strain Williams 82 clone GM_WBa0093J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556881.11e-153zinc-finger homeodomain protein 2
SwissprotA2Z2598e-49ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0R0L3A70.0A0A0R0L3A7_SOYBN; Uncharacterized protein
STRINGGLYMA02G31216.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-50homeobox protein 22