PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G187400.1.p
Common NameGLYMA_02G187400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 104aa    MW: 12126.1 Da    PI: 8.7915
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G187400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.5e-14347549
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         n++n  v f k  + ++KKA+EL +LC+++  vi+fs++++++ +
  Glyma.02G187400.1.p  3 NEINLRVKFLKCHTRVFKKASELAILCGVDLIVIMFSPSNRVFSF 47
                         899999***********************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.521151IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-6150IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-14260IPR002100Transcription factor, MADS-box
PfamPF003191.3E-15347IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-51328IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-52849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MRNEINLRVK FLKCHTRVFK KASELAILCG VDLIVIMFSP SNRVFSFGSS NYLNEAYSTL  60
DEGELYAHLN YLTNQITIDK KCIKDLNYLL KVIKDQFWWG YTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G187400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537139.13e-41agamous-like MADS-box protein AGL62
RefseqXP_028184633.13e-41agamous-like MADS-box protein AGL62
TrEMBLA0A0R0KYZ02e-70A0A0R0KYZ0_SOYBN; Uncharacterized protein
TrEMBLA0A445LQT62e-70A0A445LQT6_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G10690.21e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-14AGAMOUS-like 62