PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G189500.1.p
Common NameGLYMA_02G189500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23554.5 Da    PI: 8.9677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G189500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.51.3e-111149341
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         i+n  +r++ f k +ng lKK  E+ +LCd++++ ii+ 
  Glyma.02G189500.1.p 11 INNPLKRKTIFKKIKNGFLKKVDEITTLCDIQACAIIYT 49
                         8999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-10160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-16181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.535149IPR002100Transcription factor, MADS-box
CDDcd002661.78E-17283No hitNo description
PfamPF003191.3E-101149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MARKKLLLSY INNPLKRKTI FKKIKNGFLK KVDEITTLCD IQACAIIYTL DEPEPKVWLF  60
NQGMESVISR FMGVSKLARS KRMLCQENLL KRNMMKAQGK LMSEIKKKEI DLFMCQYFSS  120
WNNDNANIID QNDIILLADK KLEITKKNEI FQVQEVTPAI KNGGETMTKG EQALVANVDA  180
MPNLNWSNDN INDDDGDGID VKIGRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G189500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591590.11e-110agamous-like MADS-box protein AGL80
RefseqXP_028186315.11e-110agamous-like MADS-box protein AGL80
TrEMBLA0A0B2NQI91e-148A0A0B2NQI9_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBLK7K9F61e-148K7K9F6_SOYBN; Uncharacterized protein
STRINGGLYMA02G34345.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699628
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-21M-type_MADS family protein