PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G200500.1.p
Common NameGLYMA_02G200500, LOC100818164
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 345aa    MW: 39079.7 Da    PI: 6.8901
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G200500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-3275181199
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k ltpsdv+k++rlv+pk++ae++        g+++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F
  Glyma.02G200500.1.p  75 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsggdsGSSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLF 164
                          99****************************999877777999************************************************ PP

                          EE-SSSEE..EEEEE-S CS
                   B3  83 kldgrsefelvvkvfrk 99 
                          ++++ + ++l+++++r+
  Glyma.02G200500.1.p 165 QRHRADAQRLFIGWRRR 181
                          *88879999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-4168185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3170183IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-2973172No hitNo description
PROSITE profilePS5086313.91675182IPR003340B3 DNA binding domain
PfamPF023621.0E-2975181IPR003340B3 DNA binding domain
SMARTSM010193.0E-2575182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSTNHYTMDL PEPTLWWPHP HQQQLTLIDP DPLPLNLNND DNDNGDDNDN DENQTVTTTT  60
TGGEEEIINN KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLSGGDSGS SECKGLLLSF  120
EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKDKRLDAGD VVLFQRHRAD AQRLFIGWRR  180
RRQSDALPPP AHVSSRKSGG DGNSSKNEGD VGVGWTRGFY PAHHPYPTHH HHPSPYHHQQ  240
DDSLHAVRGS QGQNQRTRPV GNSSSSSSSS SRVLRLFGVN MECQPEHDDS GPSTPQCSYN  300
TNNILPSTQG TDIHSHLNFY QQQQTSNSKP PPHHMMIRHQ PYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-50681811113B3 domain-containing transcription factor NGA1
5os9_B3e-50681811113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G200500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518204.10.0B3 domain-containing protein At2g36080
SwissprotQ9FNI33e-65Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLI1JGL10.0I1JGL1_SOYBN; Uncharacterized protein
STRINGGLYMA02G36090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.26e-62B3 family protein