PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G202600.1.p

Common Name

GLYMA_02G202600

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 126aa MW: 14013.9 Da PI: 11.0941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G202600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	33	78	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+ +a K +Ka++L + ++Y++ Lq Glyma.02G202600.1.p 33 HSIAERLRRERIAERMKALQELVTNA-----NKTDKASMLDEIIDYVRFLQ 78 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.14E-11	26	82	No hit	No description
SuperFamily	SSF47459	5.37E-16	26	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.234	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	29	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	33	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-12	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
ERSFGASAQA NGGGSGQPKQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVTNANK 60 TDKASMLDEI IDYVRFLQLQ VKGTPSSNLA NHVDFAKVLQ PIQSQISEFP IPLSHFFWLR 120 GSKTI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	42	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.16666	1e-116	epicotyl\| leaf\| pod\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G202600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006600551.1	1e-46	transcription factor bHLH69 isoform X1
Refseq	XP_006600552.1	2e-46	transcription factor bHLH69 isoform X3
Refseq	XP_006600553.1	1e-46	transcription factor bHLH69 isoform X4
Refseq	XP_006600554.1	1e-46	transcription factor bHLH69 isoform X5
Refseq	XP_014625615.1	2e-46	transcription factor bHLH69 isoform X2
Refseq	XP_028208596.1	1e-46	transcription factor bHLH69-like isoform X1
Refseq	XP_028208597.1	2e-46	transcription factor bHLH69-like isoform X2
Refseq	XP_028208598.1	2e-46	transcription factor bHLH69-like isoform X3
Refseq	XP_028208599.1	1e-46	transcription factor bHLH69-like isoform X4
Refseq	XP_028208600.1	1e-46	transcription factor bHLH69-like isoform X5
Swissprot	Q8S3D5	3e-36	BH069_ARATH; Transcription factor bHLH69
TrEMBL	A0A0R0L4V1	5e-87	A0A0R0L4V1_SOYBN; Uncharacterized protein (Fragment)
STRING	GLYMA02G36380.1	5e-61	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	9e-25	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Glyma.02G202600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]