PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G211900.3.p
Common NameGLYMA_02G211900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 256aa    MW: 28021.2 Da    PI: 6.8552
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G211900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.61.7e-2950106360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          +vrY+eC+kNhA+s GghavDGC+Efm++ g++g  +++ CaAC+CHRnFHR+e + e
  Glyma.02G211900.3.p  50 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GDDGMLEGVICAACNCHRNFHRKEIDGE 106
                          79**************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-1941105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2651103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-2552103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.04853102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.03E-21181253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-31182253IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26195251IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFDEQEEHE EEEEMGIPEP AVAVAAPQTF DSRSKIGGGE ARKSAFGVAA VRYRECQKNH  60
AVSFGGHAVD GCCEFMAAGD DGMLEGVICA ACNCHRNFHR KEIDGEMSSF HHRAQPPPPP  120
LHHHHQFSPY YHHRVPQHPT AAGYIHHHLT PPMSQHRPLA LPAAASGGGL SREEEDMSNP  180
SSSGGGGGGG GGGSKKRFRT KFTQEQKDKM LAFAEQLGWR IQKHDESAVE QFCAEINVKR  240
NVLKVWMHNN KSTLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-281942531675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182193SGGGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.598350.0flower| pod
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G211900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8896801e-176JQ889680.1 Hardenbergia violacea microsatellite Hvio16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518249.10.0zinc-finger homeodomain protein 2 isoform X1
RefseqXP_028212776.10.0zinc-finger homeodomain protein 2-like isoform X1
SwissprotQ6YXH51e-67ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0R0KZ850.0A0A0R0KZ85_SOYBN; Uncharacterized protein
TrEMBLA0A0R0KZC70.0A0A0R0KZC7_SOYBN; Uncharacterized protein
TrEMBLA0A445LS580.0A0A445LS58_GLYSO; Zinc-finger homeodomain protein 2
STRINGGLYMA02G37481.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-60homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]