PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G213800.1.p
Common NameGLYMA_02G213800, LOC100816394
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 255aa    MW: 28063.6 Da    PI: 8.3282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G213800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-154794254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++h e+ErrRR+riNs +++Lr+llP+a      K +Ka+ L ++ve++k L
  Glyma.02G213800.1.p 47 CKSHREAERRRRQRINSHLSTLRTLLPNA-----AKSDKASLLGEVVEHVKRL 94
                         789*************************8.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9294594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-124794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1448102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-144898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-55897No hitNo description
Gene3DG3DSA:3.30.70.2604.0E-6146211No hitNo description
SuperFamilySSF550212.52E-5146212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLPFRRFYGF ESWLDHDAGH AQSSLIKKAV ELDGARSKTE RKSTEACKSH REAERRRRQR  60
INSHLSTLRT LLPNAAKSDK ASLLGEVVEH VKRLRKQADD VTCGDSYSSR SGEPGSVRSE  120
AWPFPGECDE VTVSYCDGED GEPKRVKATV CCGDRTGLNR DVSQAIRSVR AKAVRAEMMT  180
VGGRTKSVVV VEWEKEEEEV GALERALKAV VENRALVGFG MGPVILGQKR GRDCCASPSS  240
EVDSDFLLRN GSFC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.381700.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G213800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351870.0AC235187.1 Glycine max strain Williams 82 clone GM_WBb0010C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518258.10.0transcription factor bHLH30
RefseqXP_028212989.10.0transcription factor bHLH30-like
TrEMBLA0A445LRW80.0A0A445LRW8_GLYSO; Transcription factor AIG1 isoform A
TrEMBLI1JGZ80.0I1JGZ8_SOYBN; Uncharacterized protein
STRINGGLYMA02G37720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-29basic helix-loop-helix 32