PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G234600.1.p

Common Name

GLYMA_02G234600, LOC100778248

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 254aa MW: 27313.3 Da PI: 8.2846

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G234600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.5e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l Glyma.02G234600.1.p 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRIRDPVYGCMGAISALQQQVQRL 135 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+++++e Glyma.02G234600.1.p 136 QVELNATRAE 145 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-42	46	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MFGHPETDRL DEIITKVRAE GEASCQMGRK HFYGPTPGTT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKM LMEVPEGQRA DAANSLVYEA NLRIRDPVYG 120 CMGAISALQQ QVQRLQVELN ATRAEILKYK YREAACIISS HHHVALVSSA DAISIAAIPA 180 DSSQGLSQPQ IQPHPPPPPP KPLPSPPPPK PLPSPSILLS SLSSSSASSV YTPPKSTMSL 240 GSISTTENVP YFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	39	157	4	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	39	157	4	122	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G234600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-136	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518338.2	0.0	LOB domain-containing protein 15 isoform X1
Refseq	XP_028215056.1	0.0	LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	4e-71	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A445LT72	0.0	A0A445LT72_GLYSO; LOB domain-containing protein 13 isoform B
TrEMBL	K7KAB5	0.0	K7KAB5_SOYBN; Uncharacterized protein
STRING	GLYMA02G40080.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-68	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Glyma.02G234600.1.p
Entrez Gene	100778248

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]