PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G234600.2.p

Common Name

GLYMA_02G234600, LOC100778248

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 228aa MW: 24398 Da PI: 9.0001

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G234600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5.1e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l Glyma.02G234600.2.p 20 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRIRDPVYGCMGAISALQQQVQRL 109 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+++++e Glyma.02G234600.2.p 110 QVELNATRAE 119 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGRKHFYGPT PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN 60 VSKMLMEVPE GQRADAANSL VYEANLRIRD PVYGCMGAIS ALQQQVQRLQ VELNATRAEI 120 LKYKYREAAC IISSHHHVAL VSSADAISIA AIPADSSQGL SQPQIQPHPP PPPPKPLPSP 180 PPPKPLPSPS ILLSSLSSSS ASSVYTPPKS TMSLGSISTT ENVPYFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-46	13	131	4	122	LOB family transfactor Ramosa2.1
5ly0_B	6e-46	13	131	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G234600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-136	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518338.2	1e-164	LOB domain-containing protein 15 isoform X1
Refseq	XP_006575444.1	1e-164	LOB domain-containing protein 13 isoform X2
Refseq	XP_028215056.1	1e-164	LOB domain-containing protein 15-like isoform X1
Refseq	XP_028215059.1	1e-164	LOB domain-containing protein 13-like isoform X2
Swissprot	Q9AT61	6e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A445LSZ4	1e-163	A0A445LSZ4_GLYSO; LOB domain-containing protein 13 isoform A
TrEMBL	I1JHK6	1e-163	I1JHK6_SOYBN; Uncharacterized protein
STRING	GLYMA02G40080.2	1e-163	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-67	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Glyma.02G234600.2.p
Entrez Gene	100778248

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]