PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G237500.3.p
Common NameGLYMA_02G237500, LOC100786265
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 397aa    MW: 44681.5 Da    PI: 9.824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G237500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.4e-161422171497
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          + + lp kf+eeh  +k+   +++lede+g ++e  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ s+f  ++ ++
  Glyma.02G237500.3.p 142 KSMGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF--KIYIV 217
                          4589*********4.4555.49***************..555544..*************************99999..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-15129220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026129220IPR003340B3 DNA binding domain
CDDcd100171.09E-21133218No hitNo description
SuperFamilySSF1019362.16E-17134218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-17134218IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-14142217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN  60
VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL  120
CALEAAEAIQ INLNSSNPSF IKSMGLPSKF CEEHLPKTLH DMVLEDENGS EYEAVYIGNR  180
AGLSGGWRAF ALDHKLDDGD ALVFELIEAS RFKIYIVRAF PDSVEEKGNN ILEEEGNVRA  240
TKAPKAACNL ESECKTKKPK QAAVYETKES ESSQEYLLDS SIDNEVKPQG VNPTNKETKF  300
SQKNTPKKSK YPATADSKGK VQIKTEKPKA SIKLSNNTRK SKEGINEIGG SDKLEKNEFV  360
QDADSKLEKV ELVEEARKCV TKKLEKTSSK FFRKKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G237500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-71AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624893.10.0putative B3 domain-containing protein At5g58280 isoform X2
SwissprotQ9FHB26e-54Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A0R0L5F50.0A0A0R0L5F5_SOYBN; Uncharacterized protein
STRINGGLYMA02G40400.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-40B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]