PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G237500.6.p
Common NameGLYMA_02G237500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 378aa    MW: 42652.5 Da    PI: 8.8606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G237500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-19110198197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp kf+eeh  +k+   +++lede+g ++e  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ s+f
  Glyma.02G237500.6.p 110 FIKSMVRSHVYSCFWLGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF 193
                          89************************4.4555.49***************..555544..*************************99999 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            ++ ++
  Glyma.02G237500.6.p 194 --KIYIV 198
                          ..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-21103199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-22105199IPR015300DNA-binding pseudobarrel domain
CDDcd100174.89E-27108199No hitNo description
PROSITE profilePS5086312.788110201IPR003340B3 DNA binding domain
PfamPF023622.8E-17110198IPR003340B3 DNA binding domain
SMARTSM010197.2E-23110201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGITNLEEPK NSPKKLNKYS HLVLYIYFLM IKRDTEHPKF VVDSVYFFLS QVNIDLPPLR  60
KRSRSSSSSW GSYIARPLDE IKEATKEERL CALEAAEAIQ INLNSSNPSF IKSMVRSHVY  120
SCFWLGLPSK FCEEHLPKTL HDMVLEDENG SEYEAVYIGN RAGLSGGWRA FALDHKLDDG  180
DALVFELIEA SRFKIYIVRA FPDSVEEKGN NILEEEGNVR ATKAPKAACN LESECKTKKP  240
KQAAVYETKE SESSQEYLLD SSIDNEVKPQ GVNPTNKETK FSQKNTPKKS KYPATADSKG  300
KVQIKTEKPK ASIKLSNNTR KSKEGINEIG GSDKLEKNEF VQDADSKLEK VELVEEARKC  360
VTKKLEKTSS KFFRKKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G237500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-71AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624894.10.0putative B3 domain-containing protein At5g58280 isoform X3
TrEMBLA0A0R0L0N10.0A0A0R0L0N1_SOYBN; Uncharacterized protein
STRINGGLYMA02G40400.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-47B3 family protein