PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G247100.1.p
Common NameGLYMA_02G247100, LOC100306391
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 221aa    MW: 24900.1 Da    PI: 8.6925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G247100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ed++l+d+++ +G g+W++I++  g++R++k+c+ rw++yl
  Glyma.02G247100.1.p 13 KGAWSKQEDQKLIDYIQVHGEGCWRSIPKAAGLHRCGKSCRMRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding49.11.3e-1567110247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Glyma.02G247100.1.p  67 GIFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                          66779****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-24462IPR009057Homeodomain-like
PROSITE profilePS5129425.579864IPR017930Myb domain
SuperFamilySSF466893.15E-2910107IPR009057Homeodomain-like
SMARTSM007179.7E-151262IPR001005SANT/Myb domain
PfamPF002496.4E-161360IPR001005SANT/Myb domain
CDDcd001672.39E-111560No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2463116IPR009057Homeodomain-like
PROSITE profilePS5129420.51465115IPR017930Myb domain
SMARTSM007172.4E-1465113IPR001005SANT/Myb domain
PfamPF002495.3E-1469110IPR001005SANT/Myb domain
CDDcd001677.21E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRKPCCDKEN INKGAWSKQE DQKLIDYIQV HGEGCWRSIP KAAGLHRCGK SCRMRWLNYL  60
RPGIKRGIFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI  120
DPNSHKPHQS FPRPHVSSAD HQGASTSESI NNNKVPFFNS RGSAATDHHK ISFTKEETSI  180
ISSPPLNLDL TISLPSPVEE NKNSDHESAK TCDVDIDLNC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G247100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904650.0BT090465.1 Soybean clone JCVI-FLGm-4F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238116.11e-164uncharacterized protein LOC100306391
RefseqXP_028216321.11e-164transcription repressor MYB4-like
SwissprotQ9SZP12e-77MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A445LTR41e-162A0A445LTR4_GLYSO; Transcription repressor MYB4
TrEMBLC6SZ671e-162C6SZ67_SOYBN; Uncharacterized protein
STRINGGLYMA02G41440.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-80myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]