PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G252400.1.p
Common NameGLYMA_02G252400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 164aa    MW: 18438.2 Da    PI: 7.0571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G252400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11143754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         ++ErrRR+ +N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Glyma.02G252400.1.p  1 MAERRRRKCLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 43
                         58*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-14154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-9147No hitNo description
PROSITE profilePS5088814.723143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.62E-485148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAERRRRKCL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERIGKL QEEEMEEGTN  60
RINLLGISKE LKPNEVMVRN SPKDTRISIC CATKPGLLLS TVNTLEALGL EIHQCVISSF  120
NDFSIQASCS EVAEQRNCMS QEEIKQALFR NASYGEASVQ NVP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.555231e-134pod| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G252400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944231e-132BT094423.1 Soybean clone JCVI-FLGm-18L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248313.13e-97transcription factor bHLH93-like isoform X1
SwissprotQ9LSL18e-69BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445LTZ31e-115A0A445LTZ3_GLYSO; Uncharacterized protein
TrEMBLK7KAP21e-115K7KAP2_SOYBN; Uncharacterized protein
STRINGGLYMA02G41964.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-71beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]