PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G253100.1.p
Common NameGLYMA_02G253100, LOC100817109
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 400aa    MW: 43813.6 Da    PI: 7.2838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G253100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174489147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd ll ++v+q+G ++W  Iar ++ gR+ k+c++rw + 
  Glyma.02G253100.1.p 44 KGPWSPEEDALLSRLVAQFGARNWGMIARGVP-GRSSKSCRLRWCNQ 89
                         79******************************.***********985 PP
2Myb_DNA-binding56.37.5e-1896140147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T+eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Glyma.02G253100.1.p  96 RKPFTEEEDNIIVSAHAIHGNK-WAIIAKLLP-GRTDNAIKNHWNST 140
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.743990IPR017930Myb domain
SuperFamilySSF466891.68E-3042137IPR009057Homeodomain-like
SMARTSM007174.1E-154392IPR001005SANT/Myb domain
PfamPF002498.1E-164489IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-254597IPR009057Homeodomain-like
CDDcd001671.34E-144688No hitNo description
PROSITE profilePS5129425.78391145IPR017930Myb domain
SMARTSM007171.3E-1695143IPR001005SANT/Myb domain
PfamPF002499.2E-1696140IPR001005SANT/Myb domain
CDDcd001675.66E-1398141No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2398144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MTAEDRSAEE NVRNGVAAKD LGGKEKDIAE VTSAAEGLVA GSVKGPWSPE EDALLSRLVA  60
QFGARNWGMI ARGVPGRSSK SCRLRWCNQL DPCLKRKPFT EEEDNIIVSA HAIHGNKWAI  120
IAKLLPGRTD NAIKNHWNST LTRKRMEMGR YVPAHADVIE DGTGNFEKTK ASSEETMSIG  180
DINSLNPAEV RNVMMNDETK PPTKDDAKVE EHATLHRPVA RVSAFSFYNS PGRPTMGSCS  240
KMFPRQSPLI QSPKPDVGPC KLFDNIDCEP MVSSKDDAKV EEHATLHRPV ARVSAFSFYN  300
SPGRPTMGSC SKMFPRQSPL IQSPKPDVGS CKLFDNIDCE PMVPSQCGHG CCSGDSRESH  360
LHGSLLGPEF VDYLESPFSS HAFLSIATDL NCCPKYHRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-37431446107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G253100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575526.10.0transcription factor MYB25
TrEMBLK7KAP40.0K7KAP4_SOYBN; Uncharacterized protein
STRINGGLYMA02G42030.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3512322
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-83myb domain protein 109