PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G264500.1.p
Common NameGLYMA_02G264500, LOC100803403
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 189aa    MW: 21125.7 Da    PI: 7.404
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G264500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.5e-40121111100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Glyma.02G264500.1.p  12 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 101
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la +k++
  Glyma.02G264500.1.p 102 QHDLAIAKDR 111
                          ****999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.42511112IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-3912109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKGYYEPRSS SSCAACKFLK RRCIPNCIFA PYFRSDECKK FAKVHKVFGA SNVSKILVEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMVE LQHDLAIAKD RLARYATAAA  120
TATTTPSNST SHDAFFNGHV SLPPFPDFYT CADNSNNNND NFCHTSSSQS SWTRHETVDD  180
FIQTPYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4771166115LOB family transfactor Ramosa2.1
5ly0_B2e-4771166115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G264500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358820.0AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519427.21e-140LOB domain-containing protein 21
SwissprotQ9SRL84e-62LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0R0LBU11e-139A0A0R0LBU1_SOYBN; Uncharacterized protein
STRINGGLYMA02G43220.21e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-62LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]