PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G264500.2.p

Common Name

GLYMA_02G264500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 145aa MW: 16095.3 Da PI: 8.806

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G264500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.5e-40	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l Glyma.02G264500.2.p 12 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 101 6*************************************************************************************** PP DUF260 91 kaelallkee 100 +++la +k++ Glyma.02G264500.2.p 102 QHDLAIAKDR 111 **999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MKGYYEPRSS SSCAACKFLK RRCIPNCIFA PYFRSDECKK FAKVHKVFGA SNVSKILVEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMVE LQHDLAIAKD RLARYATAAA 120 TATTTPSNST SHDAFFNGHD FHGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-48	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-48	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G264500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235882	0.0	AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519427.2	2e-99	LOB domain-containing protein 21
Swissprot	Q9SRL8	8e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0R0L1I8	1e-103	A0A0R0L1I8_SOYBN; Uncharacterized protein
STRING	GLYMA02G43220.2	4e-98	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-63	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Glyma.02G264500.2.p

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]