PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G264900.1.p

Common Name

GLYMA_02G264900, LOC778069

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 248aa MW: 28244.7 Da PI: 6.7222

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G264900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.1e-17	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G ++W+ I++ + gR++k+c++rw + Glyma.02G264900.1.p 9 KGSWSPQEDATLLKLVNEHGARNWSVISAGIS-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	55.1	1.7e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ Glyma.02G264900.1.p 63 PFTPAEDKMIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 105 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.899	4	55	IPR017930	Myb domain
SuperFamily	SSF46689	4.31E-30	6	102	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-14	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-17	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	10	62	IPR009057	Homeodomain-like
CDD	cd00167	6.26E-13	11	53	No hit	No description
PROSITE profile	PS51294	24.575	56	110	IPR017930	Myb domain
SMART	SM00717	4.5E-15	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-23	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	7.5E-15	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	6.80E-12	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MTGGHDRVKG SWSPQEDATL LKLVNEHGAR NWSVISAGIS GRSGKSCRLR WCNQLSPEVQ 60 HRPFTPAEDK MIIKAHAIHG NKWATISRLL PGRTDNAIKN HWNSTLRRRR AVESSSSSSA 120 SPPAKRHSSL FDTLHPFKKQ CIEKENEEER VLSPVTTSLS LFPPGEKSEE EEEEEEQEEE 180 EKEKEELFQV NVNVNQKVTD QNYFMQMMQR MIAEEVRNYM ETLRNCQRNN GLSLEPGLDL 240 LPPTLPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-36	6	109	4	107	B-MYB
1gv2_A	2e-36	8	109	3	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.13756	0.0	meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G264900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518439.1	0.0	transcription factor MYB73 isoform X1
Refseq	XP_014625530.1	0.0	transcription factor MYB73 isoform X2
Refseq	XP_028217857.1	0.0	transcription factor MYB73-like
TrEMBL	A0A445LUF2	0.0	A0A445LUF2_GLYSO; Transcription factor MYB73
TrEMBL	I1JIG1	0.0	I1JIG1_SOYBN; Uncharacterized protein
STRING	GLYMA02G43280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-50	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Glyma.02G264900.1.p
Entrez Gene	778069