PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G267400.1.p
Common NameGLYMA_02G267400, Glyma02g43500.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 216aa    MW: 23433 Da    PI: 5.3332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G267400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-192575155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a+++++g
  Glyma.02G267400.1.p 25 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDKAARSFRG 75
                         589*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-122575IPR001471AP2/ERF domain
CDDcd000182.33E-312583No hitNo description
Gene3DG3DSA:3.30.730.104.0E-312683IPR001471AP2/ERF domain
SMARTSM003805.7E-362689IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-212683IPR016177DNA-binding domain
PROSITE profilePS5103223.2882683IPR001471AP2/ERF domain
PRINTSPR003675.4E-102738IPR001471AP2/ERF domain
PRINTSPR003675.4E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRRGRTAAAA AAVVDPTPDQ AKETTRFRGV RKRPWGRFAA EIRDPWKKQR VWLGTFDSAE  60
DAARAYDKAA RSFRGPKAKT NFPPFPGPAE ADHHSQIPLY QAHGLSTKFE PVVQVNRPTS  120
SGMSSTVESF SGPRVPSSSS RAKPLVVVVN PIIPLNDDED DCHSDCDSSS SVVDDGQDCV  180
LISSFRQPLP FDLNLPPSDA DDDNDDDLPA TALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2123831172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.330490.0cotyledon| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G267400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310720.0KT031072.1 Glycine max clone HN_CCL_96 AP2-EREBP transcription factor (Glyma02g43500.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304374.21e-156AP2-EREBP transcription factor
RefseqXP_028218135.11e-156ethylene-responsive transcription factor 3-like
SwissprotQ9SXS83e-41ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0K2CTA81e-154A0A0K2CTA8_SOYBN; AP2-EREBP transcription factor (Fragment)
TrEMBLA0A445LUJ91e-154A0A445LUJ9_GLYSO; Ethylene-responsive transcription factor 3
STRINGGLYMA02G43500.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-24ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]