PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G287700.4.p
Common NameGLYMA_02G287700, LOC100782733
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28340.8 Da    PI: 9.705
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G287700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.6e-312776150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Glyma.02G287700.4.p 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 76
                         79***********************************************8 PP
2K-box109.73.2e-36961915100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          + +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe+L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+e elq++n+ L
  Glyma.02G287700.4.p  96 NAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEGLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFL 185
                          44559************************************************************************************* PP

                K-box  95 rkklee 100
                          r+k++e
  Glyma.02G287700.4.p 186 RAKIAE 191
                          ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-401978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2071979IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-332096IPR002100Transcription factor, MADS-box
CDDcd002651.21E-432094No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-332141IPR002100Transcription factor, MADS-box
PfamPF003191.0E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-334156IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-335677IPR002100Transcription factor, MADS-box
PfamPF014862.8E-26102189IPR002487Transcription factor, K-box
PROSITE profilePS5129715.084105195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFPNEAIIS EGSNSQKKTG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALVVFSSRG RLYEYANNSV RGTIERYKKA CAASTNAESV SEANTQFYQQ EASKLKRQIR  120
DIQNLNRHIL GEGLSSLSLK ELKNLESRLE KGLSRVRSRK HETLFADIEF MQKREIELQN  180
HNNFLRAKIA ENERAQQRQQ DMIPGTECES TIPNSQSYDR NFFPVNLIDS NNNQYSRQDQ  240
TALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-202087168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-202087168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-202087168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-202087168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374430.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G287700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312740.0KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575666.10.0agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_006575667.10.0agamous-like MADS-box protein AGL5 isoform X2
RefseqXP_028220342.10.0agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_028220346.10.0agamous-like MADS-box protein AGL5 isoform X2
SwissprotQ93XH41e-124MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445LVI81e-180A0A445LVI8_GLYSO; Agamous-like MADS-box protein AGL5 isoform A
TrEMBLI1JJ561e-180I1JJ56_SOYBN; Uncharacterized protein
STRINGGLYMA02G45730.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]