PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G287700.5.p
Common NameGLYMA_02G287700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22444.7 Da    PI: 10.1367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G287700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.4e-312776150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Glyma.02G287700.5.p 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 76
                         79***********************************************8 PP
2K-box95.39.8e-3296175584
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                          + +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe+L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+ 
  Glyma.02G287700.5.p  96 NAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEGLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKRV 175
                          44559*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-401978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2071979IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-332096IPR002100Transcription factor, MADS-box
CDDcd002653.98E-432094No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332141IPR002100Transcription factor, MADS-box
PfamPF003197.0E-272875IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-334156IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-335677IPR002100Transcription factor, MADS-box
PfamPF014868.6E-23102175IPR002487Transcription factor, K-box
PROSITE profilePS5129712.454105196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEFPNEAIIS EGSNSQKKTG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALVVFSSRG RLYEYANNSV RGTIERYKKA CAASTNAESV SEANTQFYQQ EASKLKRQIR  120
DIQNLNRHIL GEGLSSLSLK ELKNLESRLE KGLSRVRSRK HETLFADIEF MQKRVLTISF  180
DAISLLYLLH IYAYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-202087168Myocyte-specific enhancer factor 2A
3mu6_B2e-202087168Myocyte-specific enhancer factor 2A
3mu6_C2e-202087168Myocyte-specific enhancer factor 2A
3mu6_D2e-202087168Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374430.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G287700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938590.0BT093859.1 Soybean clone JCVI-FLGm-14E22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575666.11e-123agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_006575667.11e-123agamous-like MADS-box protein AGL5 isoform X2
RefseqXP_028220342.11e-123agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_028220346.11e-123agamous-like MADS-box protein AGL5 isoform X2
SwissprotP293857e-98AGL5_ARATH; Agamous-like MADS-box protein AGL5
TrEMBLA0A445LVH61e-139A0A445LVH6_GLYSO; Agamous-like MADS-box protein AGL5 isoform B
TrEMBLI1JJ581e-139I1JJ58_SOYBN; Uncharacterized protein
STRINGGLYMA02G45730.41e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.21e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Rathnakumar K, et al.
    Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
    J. Thromb. Haemost., 2016. 14(8): p. 1655-67
    [PMID:27241812]
  4. Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
    Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
    Development, 2016. 143(18): p. 3372-81
    [PMID:27510967]
  5. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]