PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G297400.2.p
Common NameGLYMA_02G297400, LOC100816583
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 492aa    MW: 53386.9 Da    PI: 7.299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G297400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32136193260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.02G297400.2.p 136 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 193
                          8****************************************.***************85 PP
2WRKY106.51.3e-33310368159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.02G297400.2.p 310 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 368
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996130194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27130194IPR003657WRKY domain
SuperFamilySSF1182902.35E-25132194IPR003657WRKY domain
SMARTSM007742.3E-34135193IPR003657WRKY domain
PfamPF031066.2E-25136192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-38295370IPR003657WRKY domain
SuperFamilySSF1182901.7E-29302370IPR003657WRKY domain
PROSITE profilePS5081138.825305370IPR003657WRKY domain
SMARTSM007743.1E-39310369IPR003657WRKY domain
PfamPF031062.8E-26311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MASAASATFP VTTACFNTNT VDARKSSFFE FKPLNRSNKV PADFNNHVSK QSTQVEGPGK  60
AQSFASSPLV ESEITVPSNE LSLSSPVQMV SSSASAPVDV DLDEINHKGN TATGLQASHV  120
EVRGSGLSVA AEKTSDDGYN WRKYGQKLVK GSEFPRSYYK CTHPNCEVKK LFERSHDGQI  180
TEIVYKGTHD HPKPQSSCRY STGTVMYIQG ERSDKASLAG RDDKASTMYG QVSHAAEPNS  240
TPESSPVATN DDGLEGAGFV SNRNNEEVDD DDPFSKRRKM ELGNVDITPV VKPIREPRVV  300
VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT  360
YEGKHNHDVP AARNSSHDMA VPAATAGGQT RIKLEESDTI SLDLGMGISS AAEHRSNGQG  420
KMLHSELGET QTHASNSNFK FVHTTSAPVY FGVLNNSSNP YGSRDNRSDG PSLNHSSYPC  480
PQSMGRILLG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38136371878Probable WRKY transcription factor 4
2lex_A7e-38136371878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.605210.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G297400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753500.0EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519618.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028221428.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-158WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445LW230.0A0A445LW23_GLYSO; Putative WRKY transcription factor 20 isoform A
TrEMBLI1JJG70.0I1JJG7_SOYBN; Uncharacterized protein
STRINGGLYMA02G46690.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-154WRKY family protein