PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G003400.2.p

Common Name

GLYMA_03G003400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 316aa MW: 35041.3 Da PI: 7.2369

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G003400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	56.2	7.2e-18	246	302	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +r++r++kNRe+A rsR+RK+a+++eLe kv +Le+eN++L+ ++ + + +++ + Glyma.03G003400.2.p 246 RRQKRMIKNRESAARSRARKQAYTQELEIKVSQLEEENERLRRQNFVWLTHFKSMLQ 302 79****************************************988766666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-16	239	289	No hit	No description
SMART	SM00338	1.0E-17	242	306	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.679	244	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-12	246	297	No hit	No description
Pfam	PF00170	8.9E-15	246	290	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.19E-24	246	291	No hit	No description
PROSITE pattern	PS00036	0	249	264	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGSQSGATQD QEPKTGSLTR QGSLYNLTLD EVQNQLGNLG KPVGSMNLDE LLKSVWTVES 60 GTDAYMHHGG GQVVSAGSSL NPEQGSLTLS GDLSKKTIDE VWRDMQQNKS VGKERQPTLG 120 EMTLEDFLVK AGVSTEPFPN EDGAMAMSGV DSQHNTLQHA HWMQYQLTSV QQQQQPQQQN 180 SVMPGFSGFM AGHVVQQPIP VVLNTVRDAG YSEALPSSLM AALSDSQTAG RKRVASGNVV 240 EKTVERRQKR MIKNRESAAR SRARKQAYTQ ELEIKVSQLE EENERLRRQN FVWLTHFKSM 300 LQESIVMQKR LAWCY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26999	0.0	cotyledon\| somatic embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G003400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-139	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520322.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_028223942.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-88	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0R0KPD3	0.0	A0A0R0KPD3_SOYBN; Uncharacterized protein
STRING	GLYMA03G00580.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-79	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Glyma.03G003400.2.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]