PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G003500.2.p
Common NameGLYMA_03G003500, LOC100787389
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 222aa    MW: 24386.2 Da    PI: 5.147
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G003500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.25.5e-1618462755
              G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                         AtPk +l++m+v+gLt++hvkSHLQkYRl
  Glyma.03G003500.2.p 18 ATPKGVLRVMGVPGLTIYHVKSHLQKYRL 46
                         9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-151847IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-111847IPR006447Myb domain, plants
SuperFamilySSF466892.69E-61846IPR009057Homeodomain-like
PfamPF143796.8E-2578124IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTVLSMPLHN LVDQIVGATP KGVLRVMGVP GLTIYHVKSH LQKYRLAKYL PESPADDSKV  60
EKRNSGDSIS GADSSPGMPI NDALRMQMEV QKRLHEQLEV QKQLQMRIEA QGKYLQKIIE  120
EQQKLGSNLT TSEALPLSHD EQNHPQSEAS GSSEALASTV SPLKKQRIDD GSKDGFTASQ  180
VRNAAQKNDC NVGQLDPNLY DDAGFEFDLE TKKDEDNESG Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.578180.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G003500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ0073110.0HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628880.11e-163MYB-CC domain-containing transcription factor PHR7 isoform X4
SwissprotQ9SJW03e-52PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLK7KBW61e-161K7KBW6_SOYBN; Uncharacterized protein
STRINGGLYMA03G00590.21e-145(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-54G2-like family protein