PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G003500.3.p
Common NameGLYMA_03G003500, LOC100787389
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 266aa    MW: 28770.1 Da    PI: 6.173
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G003500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.82.4e-333690155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Glyma.03G003500.3.p 36 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 90
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8843393IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-323491IPR009057Homeodomain-like
SuperFamilySSF466893.23E-173590IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-263691IPR006447Myb domain, plants
PfamPF002491.3E-73889IPR001005SANT/Myb domain
PfamPF143799.1E-25122168IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVPHKSQGGV EQLANAGVLG GSAVKIAAAP AGGSGKQRLR WTSDLHDRFV DAITQLGGPD  60
RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD DSKVEKRNSG DSISGADSSP  120
GMPINDALRM QMEVQKRLHE QLEVQKQLQM RIEAQGKYLQ KIIEEQQKLG SNLTTSEALP  180
LSHDEQNHPQ SEASGSSEAL ASTVSPLKKQ RIDDGSKDGF TASQVRNAAQ KNDCNVGQLD  240
PNLYDDAGFE FDLETKKDED NESGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-243593159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.578180.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G003500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ0073110.0HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350635.10.0MYB-CC domain-containing transcription factor PHR7
RefseqXP_003522212.10.0MYB-CC domain-containing transcription factor PHR7 isoform X2
RefseqXP_028223945.10.0myb family transcription factor PHL7-like isoform X2
SwissprotQ9SJW05e-71PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLI1JK150.0I1JK15_SOYBN; Uncharacterized protein
STRINGGLYMA03G00590.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.16e-73G2-like family protein