PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G018000.1.p
Common NameGLYMA_03G018000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 224aa    MW: 25258.8 Da    PI: 8.2881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G018000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.2e-091133326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         t+ C++++  G Ck+Gd+C+  H+
  Glyma.03G018000.1.p 11 TSTCKYWMN-GNCKFGDQCRSLHS 33
                         889******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4834IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793835IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-61133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-61136IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-61133IPR000571Zinc finger, CCCH-type
SuperFamilySSF530989.74E-1568192IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.102.1E-671193IPR012337Ribonuclease H-like domain
CDDcd062222.73E-2971187No hitNo description
PfamPF134565.7E-2472189No hitNo description
PROSITE profilePS508799.38994191IPR002156Ribonuclease H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MFLHRTAPPP TSTCKYWMNG NCKFGDQCRS LHSWSDVEAT FVGTQHVFLD DNPRPTRLVW  60
WTPPPRGFFK LNCDGAFTVY GNKGAAGGVL RDWKGEFILG FSDALIECSS ALEAELWAIK  120
IGMQTVVARG YRNLIVESDS LKAIQIINAH KGDFLRSSIQ HMTRMVDRIC WNHVYRETNS  180
VADGFAKHGL SLSQDQSIRV FDSAPDFIES RLYGDRIGKI YCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G018000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350480.0AC235048.1 Glycine max strain Williams 82 clone GM_WBb0045O22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158841.15e-80hypothetical protein PHAVU_002G186500g
TrEMBLA0A0R0KLC51e-167A0A0R0KLC5_SOYBN; Uncharacterized protein
STRINGGLYMA03G02000.31e-161(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.25e-07C3H family protein