PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G018800.1.p
Common NameGLYMA_03G018800, LOC100814309
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 337aa    MW: 35875.7 Da    PI: 10.2038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G018800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.4e-36611612103
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          + k+ + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + s +++
  Glyma.03G018800.1.p  61 PQKRASIKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTSPSDQ 148
                          5688999*********************************************************8888854421..22222222222222 PP

                  TCP  91 aksaakskksqks 103
                          ++ +++++k++k+
  Glyma.03G018800.1.p 149 EPGEPPERKKRKR 161
                          3333322222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3066157IPR005333Transcription factor, TCP
PROSITE profilePS5136926.30567121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MADEASGDVD LRLGEPKGPK EEPETEEGSA IRVMPVAVHV PAGMSMSMSK ALAQAQVQAQ  60
PQKRASIKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LEHAEPAIIA  120
ATGTGTVPAI AMSVNGTLKI PTTSPSDQEP GEPPERKKRK RPANSAYVDI NGAAVSVSAG  180
LASSIINNNN QNAATTMTTT MAIPQHTAIP LPQGMVPVWA IPSNAVVPAA GAFFVVPQTA  240
SFQHQPQFFT IARPISEFVS SMVTPVVQLQ PTSINSSTNT NSNASSTAPS SKSPARATVM  300
APTTTTTTTR QMLRDFSLEI YDKQELQFMS RASSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154161ERKKRKRP
2155160RKKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.44580.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G018800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350480.0AC235048.1 Glycine max strain Williams 82 clone GM_WBb0045O22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576382.10.0transcription factor TCP9
SwissprotO646471e-88TCP9_ARATH; Transcription factor TCP9
TrEMBLI1JKG80.0I1JKG8_SOYBN; Uncharacterized protein
STRINGGLYMA03G02090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-64TCP family protein