PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G023100.1.p
Common NameGLYMA_03G023100, LOC100780080
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 213aa    MW: 23175.7 Da    PI: 8.8905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G023100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-39181181100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  rardPvyG+vg++++lqqq+++
  Glyma.03G023100.1.p  18 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALSRARDPVYGCVGHLFALQQQVMN 107
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael +++++
  Glyma.03G023100.1.p 108 LQAELTYVQAH 118
                          ******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.22517119IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDCGGNKNTG GSERGDGPCG ACKFLRRKCV KGCIFAPYFD SDQGTAHFAA VHKVFGASNA  60
SKLLMRIPAH KRLDAVVTLC YEALSRARDP VYGCVGHLFA LQQQVMNLQA ELTYVQAHLA  120
TMQRLPVKVA PLPPHPQSSS PPPTLHSSDH MAPNADLQSA PMMHFGPLQP HSASLPLGSI  180
VFDQSNRQLD DRELRVLARE FVSKYLPGVR FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-351711910111LOB family transfactor Ramosa2.1
5ly0_B3e-351711910111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.216971e-105cotyledon| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G023100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354100.0AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521945.21e-157LOB domain-containing protein 19
RefseqXP_028224167.11e-157LOB domain-containing protein 19-like
SwissprotO813223e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0B2NUG81e-155A0A0B2NUG8_GLYSO; LOB domain-containing protein 31
TrEMBLK7KCD71e-155K7KCD7_SOYBN; Uncharacterized protein
STRINGGLYMA03G02631.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-65LOB domain-containing protein 31