PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G034000.1.p
Common NameGLYMA_03G034000, Glyma03g04000.1, LOC100788617
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 398aa    MW: 44189.4 Da    PI: 9.3453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G034000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15238284455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h++ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  Glyma.03G034000.1.p 238 VHKQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 284
                          699***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.473234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18237307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-13238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-16239288No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17239291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSQRVPNCDV DDNNNIPTTT KIPLLPNFNF ISHEVPMLGY QAAELPCKKG QPSTYKGSHG  60
NLTSTWDKPR TSGGTLESIV SQHVSENRYK LVTMDALVPC SEQQGTQKAV VSERLDACGK  120
SRFPRVVAQE EVEKRAGVVA RGTRGTTTLE LGGCKDWSVS GSETCRRELS VTFNSATKGS  180
PENTTSSGKQ CTGTTTNDDR DSISHRISQG EVPDEDYKAT KVDRSSGSNK RIKANSVVHK  240
QSERRRRDKI NQRMKELQKL VPNSSKTDKA SMLDEVIQYM KQLQAQVQMM NWMKMYTSMM  300
LPITMQQQQQ QQQLKMSMMM AQMGMGMGMS KDMVMNMNSM NIPGFPPMLP FPSFMPMAPC  360
GDQLQGTPEK SVTMDAYSTM ASLYQQLFHP PASSSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRD
2243248RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.284910.0cotyledon| flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G034000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311000.0KT031100.1 Glycine max clone HN_CCL_212 bHLH transcription factor (Glyma03g04000.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522046.10.0transcription factor UNE10
TrEMBLI1JKW30.0I1JKW3_SOYBN; BHLH transcription factor
STRINGGLYMA03G04000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-46bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]