PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G047600.1.p
Common NameGLYMA_03G047600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 92aa    MW: 10865.8 Da    PI: 10.9296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G047600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-1137631947
                         TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                         +G++ W+tIa+ ++ gRt++++k++w+++
  Glyma.03G047600.1.p 37 FGKK-WSTIAANLP-GRTDNEIKNYWNTH 63
                         5777.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.556168IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-153481IPR009057Homeodomain-like
SuperFamilySSF466891.33E-103478IPR009057Homeodomain-like
PfamPF002492.0E-83763IPR001005SANT/Myb domain
CDDcd001672.02E-63964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MWKELPASLG KLLEARYKER EILIRRRRSH HSVTQCFGKK WSTIAANLPG RTDNEIKNYW  60
NTHIKKKLLK MGIDPMTHTH LYAIYHPNVR K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.1601e-128root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in rosette leaves and cauline leaves. Expressed at low levels in roots, stems and siliques. {ECO:0000269|PubMed:26139822}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G047600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312011e-125KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936579.12e-22transcription factor MYB74
RefseqXP_025614815.12e-22transcription factor MYB41
SwissprotQ9M0Y59e-20MYB74_ARATH; Transcription factor MYB74
TrEMBLK7KCX42e-61K7KCX4_SOYBN; Uncharacterized protein
STRINGGLYMA03G06225.13e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-22myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xu R, et al.
    Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.
    J. Exp. Bot., 2015. 66(19): p. 5997-6008
    [PMID:26139822]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]