PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G052300.1.p
Common NameGLYMA_03G052300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 183aa    MW: 20913.3 Da    PI: 7.177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G052300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-105191954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r RR+ri ++f  L++++P        K++ +++Le+A++Y+k L
  Glyma.03G052300.1.p 51 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKFL 91
                         699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4534291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1447103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-124896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-134895No hitNo description
SMARTSM003531.8E-124897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-75191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDHHHTPSTN QTSSSQFSSS KPNQISNKEK KGVKKCKGVM RLSTDPQSVA ARERRHRISD  60
RFKILQSMVP GGSKMDTVSM LEEAIQYVKF LKTQIWLHQT MINFMDNDNY NINDNNESSS  120
LLYPNNDCCY FPSEHFVSPQ QNATFDYSNM QDLQHLQPLA AQCGFQGEDS NYFDASLKYW  180
PA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G052300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-73AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983833.11e-137transcription factor bHLH140-like
SwissprotQ9M0414e-32BH140_ARATH; Transcription factor bHLH140
TrEMBLK7KCZ51e-135K7KCZ5_SOYBN; Uncharacterized protein
STRINGGLYMA03G06792.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Representative plantOGRP89411014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-30APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]