PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G070500.2.p
Common NameGLYMA_03G070500, LOC100779003
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 666aa    MW: 74112.4 Da    PI: 6.5942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G070500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23126226198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f kvlt sd++++g +++ +k+a e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   
  Glyma.03G070500.2.p 126 FSKVLTASDTSTHGGFSVLRKHAMEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 213
                          88****************************977777888*************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Glyma.03G070500.2.p 214 RGDNGELRVGVRR 226
                          3489999****98 PP
2Auxin_resp92.85.5e-31252332183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+ +++svGmR+km+fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  Glyma.03G070500.2.p 252 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAM-NRFSVGMRLKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 332
                          789***************6..9*************.89****************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-38117255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-39118241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-21124226No hitNo description
SMARTSM010197.0E-22126228IPR003340B3 DNA binding domain
PfamPF023622.4E-21126226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308126228IPR003340B3 DNA binding domain
PfamPF065072.7E-28252332IPR010525Auxin response factor
PfamPF023093.9E-8532590IPR033389AUX/IAA domain
PROSITE profilePS5174526.165554635IPR000270PB1 domain
SuperFamilySSF542771.05E-12556630No hitNo description
PfamPF023092.5E-6597638IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLSRAANGEV AGSGYSGEDE MYEPLWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ  60
ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN PDPCTAEPPR  120
APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD LHGYEWRFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS  240
SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG MRLKMRFEGD  300
DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW EIEPFVASAS  360
TPSVQPTMVK TKRPRPPSET PDVESKRNDS TGTWHHMQTD MNSKSNSGNA MLRNQTEGSW  420
LSSPHSSCPS HLFQDATDDS KSVSAWPVSK PHSSRLNNDH VLDQVDKESK VETATSYRLF  480
GIDLIDHSRN SPSVEKASAQ AGNAPKVTTE GCTSTLTRTD AGHLSDVPMA SSKERKQEQQ  540
QVSPKETQSK QICRSRTKVQ MQGVAVGRAV DLTMLDGYDQ LINELEEMFD IKGQLQHRNK  600
WEIVFTDDEG DMMLVGDDPW PEFCNMVRRI FICSSQDVKK MSCGSKLPIS SVEDGTVISS  660
DTTET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16453553355Auxin response factor 1
4ldw_A1e-16453553355Auxin response factor 1
4ldw_B1e-16453553355Auxin response factor 1
4ldx_A1e-16453553355Auxin response factor 1
4ldx_B1e-16453553355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.260340.0hypocotyl| leaf| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G070500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629097.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0R0KGA00.0A0A0R0KGA0_SOYBN; Auxin response factor
TrEMBLA0A445L8R10.0A0A445L8R1_GLYSO; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9