PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G083700.1.p
Common NameGLYMA_03G083700, LOC100787546
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22481.8 Da    PI: 9.0776
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G083700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.7e-181151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+n ++r+ tf kR+ng+lKK +E+S+LC++e++ ii+s++
  Glyma.03G083700.1.p 11 ISNPTKRKATFKKRKNGLLKKVSEISTLCATEACAIIYSPD 51
                         99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-20161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236149IPR002100Transcription factor, MADS-box
CDDcd002661.03E-28284No hitNo description
PRINTSPR004041.6E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23394IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MARKKVDITY ISNPTKRKAT FKKRKNGLLK KVSEISTLCA TEACAIIYSP DEPAKPEVWP  60
SDQGVKSVIS SFREVSKLEQ SKKMLCQESL LRKNLIKAQE QLKKLKTENR KKEMSLLMSQ  120
YFTIENNLEN SNTVDLNDNS FLADKNLEEI RMKIDMHQPQ EVAPTVEKGG ETMYLGDQGL  180
VNYHVQGPET NGDAMPNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDITYISNPTKRKATFKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.136680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G083700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520978.11e-146agamous-like MADS-box protein AGL80
RefseqXP_028223774.11e-146agamous-like MADS-box protein AGL80
TrEMBLA0A0B2Q2I81e-144A0A0B2Q2I8_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBLI1JM471e-144I1JM47_SOYBN; Uncharacterized protein
STRINGGLYMA03G19880.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-37AGAMOUS-like 80