PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G090800.1.p
Common NameGLYMA_03G090800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 152aa    MW: 17171 Da    PI: 7.7867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G090800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-071958847
                         HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         ++ +lv +++++G+g+W+ ++ ++g+ R+ k+ ++r  +y
  Glyma.03G090800.1.p 19 LHIILVSCIQEHGPGNWRVVPTKIGLSRCSKSYRLRSTNY 58
                         799***************************9988887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF466893.17E-102287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-112277IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MCKSEGMPAS IMPAEPSTLH IILVSCIQEH GPGNWRVVPT KIGLSRCSKS YRLRSTNYLR  60
PGIKRGNIIE QEEKMIIHLQ DLLGNIISIW EMGCNSFISS TEKAWIYHFV SNLDKSCLEL  120
VYEIKVCICW ATLLDSHGIF KSHKQLFDES S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.204273e-87leaf| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G090800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937849e-85BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA.
GenBankFJ7680229e-85FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds.
GenBankKT0312049e-85KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027349839.19e-33myb-related protein 306-like isoform X2
TrEMBLK7KDY61e-107K7KDY6_SOYBN; Uncharacterized protein
STRINGGLYMA03G22590.11e-108(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-31myb domain protein 94