PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G091500.1.p

Common Name

GLYMA_03G091500, LOC100802375

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 208aa MW: 23881.3 Da PI: 7.7989

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G091500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83	4.8e-26	43	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+ Glyma.03G091500.1.p 43 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 132 6*****************************************9999*************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-23	43	132	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDLEAVAEAV ENSAEIISAA CEGSSIEEPN VGMEFQSEEA AKNFYEEYAR REGFVVRLDR 60 CHRSEVDKQI ISRRFSCNKQ GFHVRVRNKT KPVHKPRASI REGCEAMMYV KVNTCGKWVV 120 TKFVKEHSHL LNASALPYNS LIESKDRIIQ QLAKELEHQD RLCQHYRRQL FSLLETVDEQ 180 TKCLSTKVEL VVNTVKKLEN EVQKPLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21732	0.0	leaf\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G091500.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097755	0.0	BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576241.1	1e-153	uncharacterized protein LOC100802375 isoform X1
Refseq	XP_028224876.1	1e-153	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A445L9L5	1e-151	A0A445L9L5_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B
TrEMBL	K7KDZ0	1e-151	K7KDZ0_SOYBN; Uncharacterized protein
STRING	GLYMA03G22670.2	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-54	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G091500.1.p
Entrez Gene	100802375