PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G091500.2.p
Common NameGLYMA_03G091500, LOC100802375
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 176aa    MW: 20663.8 Da    PI: 9.655
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G091500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.63.2e-2611100190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+  +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+
  Glyma.03G091500.2.p  11 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 100
                          6*******************************************9999***************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2311100IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEFQSEEAAK NFYEEYARRE GFVVRLDRCH RSEVDKQIIS RRFSCNKQGF HVRVRNKTKP  60
VHKPRASIRE GCEAMMYVKV NTCGKWVVTK FVKEHSHLLN ASALPYNSLI ESKDRIIQQL  120
AKELEHQDRL CQHYRRQLFS LLETVDEQTK CLSTKVELVV NTVKKLENEV QKPLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217320.0leaf| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G091500.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977550.0BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576241.11e-128uncharacterized protein LOC100802375 isoform X1
RefseqXP_028224876.11e-128protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A445L9L51e-127A0A445L9L5_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B
TrEMBLK7KDZ01e-127K7KDZ0_SOYBN; Uncharacterized protein
STRINGGLYMA03G22670.21e-128(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.15e-53FAR1 family protein