PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G091700.1.p
Common NameGLYMA_03G091700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 109aa    MW: 12037.8 Da    PI: 5.9122
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G091700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1482e-4623108287
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                          re drflPianvsrimkk+l anaki k aketvqecvsefisf+ +easdkcqrekrk ingddllwa++tlGfedyveplk yl
  Glyma.03G091700.1.p  23 RELDRFLPIANVSRIMKKALLANAKILKYAKETVQECVSEFISFIIDEASDKCQREKRKVINGDDLLWAMTTLGFEDYVEPLKGYL 108
                          789********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.7E-4221108IPR009072Histone-fold
SuperFamilySSF471137.3E-3126108IPR009072Histone-fold
PfamPF008087.4E-232892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.0E-175674No hitNo description
PRINTSPR006158.0E-177593No hitNo description
PRINTSPR006158.0E-1794108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MADSDNDSGG AHNSGKGGKV LPRELDRFLP IANVSRIMKK ALLANAKILK YAKETVQECV  60
SEFISFIIDE ASDKCQREKR KVINGDDLLW AMTTLGFEDY VEPLKGYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-3923108287Transcription factor HapC (Eurofung)
4g92_B9e-3923108287Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.290901e-126cotyledon
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G091700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0178303e-74BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602134.12e-65nuclear transcription factor Y subunit B-3
RefseqXP_028214205.12e-65nuclear transcription factor Y subunit B-3-like
SwissprotQ75IZ73e-58NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0B2QR594e-74A0A0B2QR59_GLYSO; Nuclear transcription factor Y subunit B-3
TrEMBLK7KDZ54e-74K7KDZ5_SOYBN; Uncharacterized protein
STRINGGLYMA03G22721.17e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-50nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]