PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G101600.1.p
Common NameGLYMA_03G101600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 172aa    MW: 19638 Da    PI: 9.8422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G101600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000221767655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         + + r+RR +i+s  ++  + +P  + k+++  l   + L +A  YIk+L+
  Glyma.03G101600.1.p 17 KTIQRNRRIHIKSLCFKYLSSIPYnDLKPTKDMLYQQDQLDLAATYIKHLK 67
                         6789********************776666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-61385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-51578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MIKTNTSTSG SPKLHRKTIQ RNRRIHIKSL CFKYLSSIPY NDLKPTKDML YQQDQLDLAA  60
TYIKHLKERI QKLKGEKEIF NIGSQLPLIE IKDLGLGIGV KLISGLNKNL MLYEVISVLE  120
EDGAEVVTVN FSTVADKFFT RVMLRIGVEP TRVYQRLPEL IAPLESWEYI S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387554e-78leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G101600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959839e-76BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525498.15e-92transcription factor bHLH162
RefseqXP_028231504.15e-92transcription factor bHLH162-like
TrEMBLA0A0R0KGX91e-122A0A0R0KGX9_SOYBN; Uncharacterized protein
STRINGGLYMA05G02110.22e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-17bHLH family protein