PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G105000.2.p

Common Name

GLYMA_03G105000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 265aa MW: 29879.8 Da PI: 6.6008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G105000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.8	2.5e-05	200	226	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h ++Er+RR+++ ++f L +P + Glyma.03G105000.2.p 200 DHIMAERKRRQDLTERFIALSATIPGL 226 599**********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-5	200	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.26E-5	201	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEDSWENWIS SLEMGEDNNS NGQSHTNSLD RDKLLTGIDL EPPDFSFHQS DHHHHHTYTM 60 SYNHHHSNNN DFPTTSTMGS SSLSYDEDAS FDERHGKMLK CNSSNSINIS QDVANSHIPS 120 SSSAPSKSTF ILSFENSTVE PALHDRVPNY YNNSPNKHFE ATCSSLLSSE ITLISSDHVI 180 TKPKAKQGAK KYRTSSEIKD HIMAERKRRQ DLTERFIALS ATIPGLKKMG DKYGMTVNDL 240 VKRLRQDLLK SHDIQESHSK ECQI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G105000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520396.2	1e-152	transcription factor bHLH18 isoform X1
Refseq	XP_028224968.1	1e-152	transcription factor bHLH18-like isoform X1
TrEMBL	A0A0R0KMH4	0.0	A0A0R0KMH4_SOYBN; Uncharacterized protein
STRING	GLYMA03G25100.2	1e-151	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G105000.2.p