PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G105700.4.p
Common NameGLYMA_03G105700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 278aa    MW: 31589.2 Da    PI: 8.7152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G105700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13119164555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR++i   f  L  l+P +     kK++Ka++L  A+eY+k+Lq
  Glyma.03G105700.4.p 119 HILAERKRRENISRMFIALSALIPDL-----KKMDKASVLSNAIEYVKYLQ 164
                          8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-18117180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-12119168No hitNo description
Gene3DG3DSA:4.10.280.103.6E-19119179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11119164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNSVEEQLEG ENSVDPGELS WENHSYSYLT KESTTLLSNS SSLEEINTGF DMTSLKQDAS  60
PQKPKSCILS FEDSTLVPIN PKKTCQIYDH GEHSKETQEK PHNRKPLKRG RRFSQTLDHI  120
LAERKRRENI SRMFIALSAL IPDLKKMDKA SVLSNAIEYV KYLQQHVKDL EQENKKRKTE  180
SLGCFKINKT CDDKPIKKCP KVEARVSGKD VLIRVTCEKQ KDIVLKLLAK LEAHNLCIVC  240
SNVLPFGNSA LSITSIAMVG AHHYYNDVFR RDQFHVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.176880.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G105700.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520402.10.0transcription factor bHLH18
SwissprotQ9T0721e-36BH025_ARATH; Transcription factor bHLH25
TrEMBLK7KE960.0K7KE96_SOYBN; Uncharacterized protein
STRINGGLYMA03G25280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-39bHLH family protein