PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G112000.1.p
Common NameGLYMA_03G112000, LOC100792115
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 198aa    MW: 22364.3 Da    PI: 9.274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G112000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-1766116255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+++AeI+dp++ n    r++lg++ t+eeA  a+++a  k++g
  Glyma.03G112000.1.p  66 RFRGVRRRP-WGKFAAEIWDPKKkN---GRVWLGTYETEEEAGLAYDRACFKMRG 116
                          79*******.**********86645...7************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.12E-3065126No hitNo description
PROSITE profilePS5103223.05166124IPR001471AP2/ERF domain
SMARTSM003808.0E-3466130IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2166125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-2966125IPR001471AP2/ERF domain
PfamPF008471.7E-1266116IPR001471AP2/ERF domain
PRINTSPR003672.7E-126778IPR001471AP2/ERF domain
PRINTSPR003672.7E-12106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTNDVSCVQS YELEHDSHTL MNVSDHPNNN PFQNPTHIDD VIQLFACDTE APLAAREVYA  60
PRKWKRFRGV RRRPWGKFAA EIWDPKKKNG RVWLGTYETE EEAGLAYDRA CFKMRGSKAK  120
LNFPHLIGSH APPERVSVVA ARKPNSPEPC FLPSPPPVTE DSSQPQGLKK RRNLADLLNR  180
LAKNRSQSMS LNCNEAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2663129268ATERF1
3gcc_A4e-2663129268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G112000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520428.11e-147ethylene-responsive transcription factor 2
TrEMBLK7KED71e-146K7KED7_SOYBN; Uncharacterized protein
STRINGGLYMA03G26394.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-25ethylene-responsive element binding factor 13