PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G112100.1.p
Common NameGLYMA_03G112100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 198aa    MW: 22574.5 Da    PI: 10.4733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G112100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-1871121255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeI++p++     r++lg++ t+eeA  a+++a+ k++g
  Glyma.03G112100.1.p  71 HYRGVRRRP-WGKFAAEIWVPKSK--GGRVWLGTYETEEEAGLAYDRAAFKMRG 121
                          8********.**********8553..38************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3070130IPR001471AP2/ERF domain
CDDcd000181.35E-3070131No hitNo description
SuperFamilySSF541715.95E-2271130IPR016177DNA-binding domain
SMARTSM003806.9E-3671135IPR001471AP2/ERF domain
PROSITE profilePS5103223.19671129IPR001471AP2/ERF domain
PfamPF008479.2E-1371121IPR001471AP2/ERF domain
PRINTSPR003671.1E-137283IPR001471AP2/ERF domain
PRINTSPR003671.1E-13111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHETYVSVCL APRHTRKNRV TEHENDSNTI SNVSNHEICL EGVHDSKGLF SCKSEQHVDA  60
REFHTHPVWK HYRGVRRRPW GKFAAEIWVP KSKGGRVWLG TYETEEEAGL AYDRAAFKMR  120
GSKAKLNFPH LVGEHVFLEP KRIRKASKQN SSKPDQSFSP TPETQGSKKR KKLGDLLNRL  180
AKSRGQMQVF EMGSHAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2770132466ATERF1
3gcc_A2e-2770132466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.520690.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G112100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7879703e-39KC787970.1 Lotus corniculatus AP2/ERF (ERF060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629178.11e-132ethylene-responsive transcription factor 2
SwissprotQ404791e-32ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0R0KHK81e-146A0A0R0KHK8_SOYBN; Uncharacterized protein
STRINGGLYMA03G26437.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-35ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]