PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G112400.1.p
Common NameGLYMA_03G112400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 190aa    MW: 21323.4 Da    PI: 10.8696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1879129255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp++n  ++r++lg++ t+eeA  a+++a+ k++g
  Glyma.03G112400.1.p  79 HYRGVRRRP-WGKFAAEIRDPNKN--SARVWLGTYVTEEEAGLAYDRAAFKIHG 129
                          8********.**********9666..5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3078138IPR001471AP2/ERF domain
CDDcd000182.86E-2978139No hitNo description
PROSITE profilePS5103223.3879137IPR001471AP2/ERF domain
SMARTSM003803.1E-3479143IPR001471AP2/ERF domain
PfamPF008472.8E-1379129IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2279138IPR016177DNA-binding domain
PRINTSPR003677.8E-138091IPR001471AP2/ERF domain
PRINTSPR003677.8E-13119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
FQKKKHRQIS LSSSSNMAAT TSCDFSSLEP LQHYLLKHGS KHLVSNGVES INDAKKLSEC  60
KRDQPRASPE VHAPPKWKHY RGVRRRPWGK FAAEIRDPNK NSARVWLGTY VTEEEAGLAY  120
DRAAFKIHGS KAKLNFPHLI GSDVSLSEPM RVSQGSKKKK NLVDLLNRLA KNRKRVGFKS  180
SEISAKIYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2976142268ATERF1
3gcc_A2e-2976142268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G112400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520430.11e-122ethylene-responsive transcription factor 1
RefseqXP_028223795.11e-122ethylene-responsive transcription factor 1-like
TrEMBLK7KED91e-137K7KED9_SOYBN; Uncharacterized protein
STRINGGLYMA03G26480.21e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-36ethylene-responsive element binding factor 13