PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G112700.1.p
Common NameGLYMA_03G112700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 224aa    MW: 25651 Da    PI: 9.5303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G112700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1985135255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a+++a+ k++g
  Glyma.03G112700.1.p  85 RYRGVRRRP-WGKFAAEIRDPKKNG--ARIWLGTYETEEEAGLAYDRAAFKMRG 135
                          8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.64E-3284145No hitNo description
SMARTSM003806.4E-3785149IPR001471AP2/ERF domain
PROSITE profilePS5103224.01285143IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2385144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-3185144IPR001471AP2/ERF domain
PfamPF008474.1E-1485135IPR001471AP2/ERF domain
PRINTSPR003671.4E-138697IPR001471AP2/ERF domain
PRINTSPR003671.4E-13125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MATTISCDFS SVESIQHYLL ELEHDFNTLM NASNHEICYS PTYNSFPSST TFRLEGVHDA  60
EGSLACKREH PKVEREFHAP PAWKRYRGVR RRPWGKFAAE IRDPKKNGAR IWLGTYETEE  120
EAGLAYDRAA FKMRGSKAKL NFPHLIGSHA PLKPIRVLTK TLKQNLLESD LSYSSAPQTQ  180
ESKKRKNLTD LLNRLAKNRK QVEVFEMSLH ASNDVNVDQW WSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3084148468ATERF1
3gcc_A2e-3084148468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G112700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920190.0BT092019.1 Soybean clone JCVI-FLGm-9K2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236246.21e-168DNA-binding domain-containing protein
TrEMBLI1JMR61e-167I1JMR6_SOYBN; Uncharacterized protein
STRINGGLYMA03G26520.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-39ethylene-responsive element binding factor 13