PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G117600.2.p

Common Name

GLYMA_03G117600

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 250aa MW: 26979.6 Da PI: 9.3218

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G117600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.4	2.3e-39	159	235	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrh+vC++hskap+++v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++ Glyma.03G117600.2.p 159 RCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 235 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.1E-33	156	221	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.906	157	234	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-37	158	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-30	160	233	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEFGENNMFS LNTHTKEENG NTGGNSNNNN IVNVWYSSWD ATTTTNAPHT TTAAEGYAGG 60 GHRLHHHQLY GGEGCHVQAD PHLTCLHLGK RHYFEDATNG DDANNVTSLG NRHVCGGGGA 120 GFVFAGNDKR ARGYYGGGGG GAGGGGGGGK SAPFAMVPRC QVEGCHVALV NAKEYHRRHR 180 VCDKHSKAPK AVVLGLEQRF CQQCSRFHVV SEFDDSKRSC RRRLAGHNER RRKSSHLSVT 240 RNSRQGKHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	160	233	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26755	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G117600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340412.1	0.0	LRR receptor kinase-like protein
Refseq	XP_028225093.1	0.0	squamosa promoter-binding-like protein 7
TrEMBL	A0A445LAL6	0.0	A0A445LAL6_GLYSO; Squamosa promoter-binding-like protein 7 isoform B
TrEMBL	K7KEH8	0.0	K7KEH8_SOYBN; Uncharacterized protein
STRING	GLYMA03G27195.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	4e-36	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Glyma.03G117600.2.p