PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G126100.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 250aa    MW: 27962.4 Da    PI: 8.5296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G126100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-1374120354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  Glyma.03G126100.1.p  74 KNHKEAEKRRRERINSHLDQLRTLLPCN-----SKTDKASLLAKVVQRVKEL 120
                          58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.82871120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-1274123No hitNo description
SuperFamilySSF474593.27E-1475131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1475129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4164225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MHHFAFAMDN SHLLQFLPNT TTSTNNTPFF HHAPPHTHST FSTNSSNNTS SYPFHLSQIT  60
ETPSHHDRAL AAMKNHKEAE KRRRERINSH LDQLRTLLPC NSKTDKASLL AKVVQRVKEL  120
KQQTSEITEL ETVPSETDEI TVLATTGGDY ASGGDDGRLI FKASLCCEDR SDLIPDLIEI  180
LNSLHLKTLK AEMATLGGRT RNVLIVAADK EHSIESIHFL QNSLKSLLDR SSSGDRSKRR  240
RGLDRRLMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223040.0meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G126100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520487.10.0transcription factor bHLH106
RefseqXP_028225181.10.0transcription factor bHLH106-like
SwissprotO806741e-75BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0R0KI950.0A0A0R0KI95_SOYBN; Uncharacterized protein
TrEMBLA0A445LAQ00.0A0A445LAQ0_GLYSO; Transcription factor bHLH106
STRINGGLYMA03G28150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]